Grain morphological traits and genetic variability of upland rice genotypes
DOI:
https://doi.org/10.5016/1984-5529.2026.v54.1522Keywords:
Oryza sativa, Cluster analysis, grain evaluationAbstract
Grain shape is characterized by a combination of grain length, grain width, grain length-to- width ratio, and grain thickness diverge according to the rice cultivar. The aim of this work was to evaluate in grains of upland rice genotypes the morphological traits and identifying the genetic divergence between them, using hierarchical and non-hierarchical clustering techniques. The experiment was carried out in randomized blocks, with 42 upland rice genotypes. The following parameters were determined with digital caliper in a sample of 20 paddy rice grains per plot: grain width (greater side dimension), grain trickness (smallest side dimension), grain length (distance between tips) and GLGW= length-to-width ratio. The data were first submitted to the F-test (p<0.05) and to the Scott-Knott multiple comparison test at p<0.01 and p<0.05. Correlogram of Pearson's linear relationship was carried out and Cluster analysis was performed in two stages, using a hierarchical and non- hierarchical method in R Core Team software version 4.0.2. It is concluded that there is high genetic divergence among the upland rice genotypes. The genotypes OSVR15029 and OSVR15044 have similar traits to the cultivar IAC 202. The genotypes which have grains classified as long-thin, meeting national preferences and can be used for the breeding programs of upland rice crop.
References
Araújo, E. S., de Souza, S. R., and M. S. Fernandes, 2003. Morphological and molecular characteristics and protein accumulation in grains of rice varieties from Maranhão. Pesquisa Agropecuária Brasileira 38(11): 1281-1288. https://doi.org/10.1590/S0100-204X2003001100005
Batista, C. D. S. 2019. Development of quick-cooking brown rice: physico-chemical, technological properties and starch digestibility (Doctoral dissertation), Universidade Federal de Pelotas, Pelotas.
Bonow, S., Von Pinho, É. V. R., Soares, A. A., and S. S. Júnior. 2007. Morphological characterization of rice cultivars aiming at certification of varietal purity. Ciência e Agrotecnologia. 31(3): 619-627. https://doi.org/10.1590/S1413-70542007000300004
Boêno, J. A., Ascheri, D. P., and P. Z. Bassinello. 2011. Technological quality of grains from four red rice genotypes. Revista Brasileira de Engenharia Agrícola e Ambiental, 15(7): 718-723. https://doi.org/10.1590/S1415-43662011000700010
Bussab, W. D. O., Miazaki, É. S., and D. F. D. Andrade. 2015. Introdução à análise de agrupamento. In Introdução à análise de agrupamento (pp. 105-105).
Carvalho, M. N. 2020. Selection of maize genotypes with forage potential in the high sertão of Sergipe: a multivariate approach. Doctoral dissertation. Universidade Federal do Sergipe, Santo Antônio da Glória.
Cruz, C.D. and Regazzi. Modelos biométricos aplicados ao melhoramento genético. Viçosa: Editora UFV, 2004. 480 p.
Charrad, M., Ghazzali, N., Boiteau, V., Niknafs, A., and M. M. Charrad. 2014. Package ‘nbclust’. Journal of Statistical Softwer, 61: 1-36.
Facchinello, P. H. K. 2017. Genetic parameters and correlations for grain quality characters in irrigated rice. Doctoral dissertation, Universidade Federal de Pelotas, Pelotas.
Fan, C., Xing, Y., Mao, H., Lu, T., Han, B., Xu, C., and Q. Zhang, 2006. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics, 112(6): 1164-1171. https://10.1007/s00122-006-0218-1
Feng, Y., Lu, Q., Zhai, R., Zhang, M., Xu, Q., Yang, Y., and Y. Wang. 2016. Genome wide association mapping for grain shape traits in indica rice. Planta, 244(4): 819-830. https://10.1007/s00425-016-2548-9
Food, F. A. O. 2018. Agriculture Organization of the United Nations. FAOSTAT: statistics database. Retrieved on april 15, 2020 from: http://faostat.fao.org.
Food, F. A. O. 2023. Agriculture Organization Of The United Nations; Retrivied on february 10, 2023. From: http://www.fao.org.
Ferrari S, Pagliari P, Trettel J (2018) Optimum sowing date and genotype testing for upland rice production in Brazil. Scientific Reports 8(1):1-8. https://doi.org/10.1038/s41598-018-26628-6
Ferrari S, do Valle Polycarpo G, Vargas PF, Fernandes AM, Cunha MLO, Pagliari P (2021) Mix of trinexapac-ethyl and nitrogen application to reduce upland rice plant height and increase yield. Plant Growth Regulation 96:209-219. https://doi.org/10.1007/s10725-021-00770-0 https://doi.org/10.1007/s10725-021-00770-0
Ferrari S, Cunha, MLO, do Valle Polycarpo G, Zied DC, Oliveira LCA, Furlani Júnior E (2022) Genotypic variation in grain nutritional content and agronomic traits of upland rice: strategy to reduce hunger and malnutrition. Cereal Research Communications 50, 1155-1163 https://doi.org/10.1007/s42976-022-00257-2
Gupta, A., Rico-Medina, A., and A. I. Caño-Delgado 2020. The physiology of plant responses to drought. Science, 368(6488): 266-269. https://doi.org/10.1126/science.aaz7614
Hair, J.F., Black, W.C., Babin, B.J., Anderson, R.E. and R. L. Tatham. 2009. Análise multivariada de dados. Bookman Editora,
Jeong, O. Y., Baek, M. K., Bombay, M., Ancheta, M. B., and, J. H. Lee. 2020. Evaluation of the optimal harvest time of rice (Oryza sativa L.) with different grain shapes grown in the Philippines. Journal of Crop Science and Biotechnology, 1-8. https://10.1007/s12892-020-00048-3
Lebart L, Morineau A, M. Piron 2000. Statistique exploratoire multidimensionnelle. Dunod, Paris, France
Li, J., Guo, H., Lou, Q., Lou, Q., Zeng, Y., Gou, Z., Xu, P., Gu, Y., Gao, S., Xu, B., Ye, W., Li, Y., Zhang, Z., Ma, W., Chen, C., Li, J. 2025. Natural variation of indels in the CTB3 promoter confers cold tolerance in japonica rice. Natural Communications 16, 1613. https://doi.org/10.1038/s41467-025-56992-7
Mantel, N. 1963. Chi-square tests with one degree of freedom; extension of the Mantel-Haenszel procedure. Journal of the American Statistical Association. 58: 690-700. https://doi.org/10.2307/2282717
Oliveira, T. R. A. 2019. Biplot analysis on the performance of green beans and inoculation of Gluconacetobacter diazotrophicus. Doctoral dissertation. Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.
Soares, A. P., Camargos, S. L. 2009. Grain morphology and protein quality in red rice varieties. Agrarian, 2(4): 31-40.
Pereira, J. A., Rangel, P. H. N. 2001. Yield and quality of irrigated rice grains in Piauí. Ciência e Agrotecnologia., 25: 569-575.
Rocha, G., Menezes, B. R. S., Braz, L. A., Lima, R. H. P., Romeiro, R. J. C., and L. B. Moreira, 2020. Morphoagronomic traits in main harvest and ratoonand track analysis in special rice types. Revista Cultura Agronômica, 29(1): 38-49. https://0.32929/2446-8355.2020v29n1p38-49
Sumanth, V., Suresh, B. G., Ram, B. J., and G. Srujana. 2017. Estimation of genetic variability, heritability and genetic advance for grain yield components in rice (Oryza sativa L.). Journal of Pharmacognosy and Phytochemistry, 6(4): 1437-1439.
Sun, P., Zhang, W., Wang, Y., He, Q., Shu, F., Liu, H., and H. Deng 2016. OsGRF4 controls grain shape, panicle length and seed shattering in rice. Journal of Integrative Plant Biology, 58(10): 836-847. https://doi.org/10.1111/jipb.12473
Suwannaporn, P., Linnemann, A. 2008. Rice‐eating quality among consumers in different rice grain preference countries. Journal of Sensory Studies., 23(1): 1-13. https://doi.org/10.1111/j.1745-459X.2007.00129.x
Tan, Y. F., Xing, Y. Z., Li, J. X., Yu, S. B., Xu, C. G., and Q. Zhang. 2000. Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theoretical and Applied Genetics. 101: 823–829. https://doi.org/10.1007/s001220051549
Wang, W., Pan, Q., Tian, B., He, F., Chen, Y., Bai, G., and E. Akhunov, E. 2019. Gene editing of the wheat homologs of TONNEAU 1‐recruiting motif encoding gene affects grain shape and weight in wheat. The Plant Journal. 100(2): 251-264. https://doi.org/10.1111/tpj.14440
Xu, X., Zhang, M., Xu, Q., Feng, Y., Yuan, X., Yu, H., and Y. Yang. 2020. Quantitative trait loci identification and genetic diversity analysis of panicle structure and grain shape in rice. Plant Growth Regulation. 90(1): 89-100. https://doi.org/10.1007/s10725-019-00549-4
Yadav, B. K., Jindal,V. K. 2007. Dimensional changes in milled rice (Oryza sativa L.) kernel during cooking in relation to its physicochemical properties by image analysis. Journal of Food Engineering. 81(4):710-720. https://doi.org/10.1016/j.jfoodeng.2007.01.005
Yang, L. V., Yueying, W. A. N. G., Jahan, N. O. U. S. H. I. N., Haitao, H. U., Ping, C. H. E. N., Lianguang, S. H. A. N. G., and Q. I. A. N. Qian. 2019. Genome-Wide Association Analysis and Allelic Mining of Grain Shape-Related Traits in Rice. Rice Science. 26(6): 384-392. https://doi.org/10.1016/j.rsci.2018.09.002
Zhang, Q., Wu, R., Hong, T. Wang, D., Li, Q., Zhang, H., Zhou, K., Yang, H., Liu, J. X., Wang, N., Ling, Y., Yang, Z., He, G., Zhao, F. 2024. Natural variation in the promoter of qRBG1/OsBZR5 underlies enhanced rice yield. Nature Communications. 15: 8565. https://doi.org/10.1038/s41467-024-52928-9
Zhao, D. S., Li, Q. F., Zhang, C. Q., Zhang, C., Yang, Q. Q., Pan, L. and, Q. Q. Liu. 2018. GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality. Nature Communications. 9(1): 1-14. https://doi.org/10.1038/s41467-018-03616-y
Zhou, Q. Y., An, H., Zhang, Y., and F.C Shen. 2000. Study on heredity of morphological character of rice grain. Journal of Southwest Agriculture Univsity. 22: 102–104.
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Copyright (c) 2026 Samuel FERRARI, Matheus Luís Oliveira CUNHA, Vagner do NASCIMENTO, Alex Mendonça de CARVALHO, Evandro Pereira PRADO, Gabriele Ferreira CAMPOS, Ronaldo da Silva VIANA, Paulo Alexandre Monteiro de FIGUEIREDO, Lais Sega TREVIZAN, Carolina dos Santos Batista BONINI

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